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J-GLOBAL ID:202302242365877683Reference number:23A2927652
V-primer:マルチサンプルバリアントコールフォーマット(VCF)遺伝子タイピングデータからゲノム全体のInDelおよびSNPマーカーを効率的に設計するためのソフトウェア
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Author(9):
Natsume Satoshi
About Natsume Satoshi
(Department of Genomics and Breeding, Iwate Biotechnology Research Center)
About Department of Genomics and Breeding, Iwate Biotechnology Research Center
,
Oikawa Kaori
About Oikawa Kaori
(Department of Genomics and Breeding, Iwate Biotechnology Research Center)
About Department of Genomics and Breeding, Iwate Biotechnology Research Center
,
Nomura Chihiro
About Nomura Chihiro
(Department of Genomics and Breeding, Iwate Biotechnology Research Center)
About Department of Genomics and Breeding, Iwate Biotechnology Research Center
,
Ito Kazue
About Ito Kazue
(Department of Genomics and Breeding, Iwate Biotechnology Research Center)
About Department of Genomics and Breeding, Iwate Biotechnology Research Center
,
Utsushi Hiroe
About Utsushi Hiroe
(Department of Genomics and Breeding, Iwate Biotechnology Research Center)
About Department of Genomics and Breeding, Iwate Biotechnology Research Center
,
Shimizu Motoki
About Shimizu Motoki
(Department of Genomics and Breeding, Iwate Biotechnology Research Center)
About Department of Genomics and Breeding, Iwate Biotechnology Research Center
,
Terauchi Ryohei
About Terauchi Ryohei
(Department of Genomics and Breeding, Iwate Biotechnology Research Center)
About Department of Genomics and Breeding, Iwate Biotechnology Research Center
,
Terauchi Ryohei
About Terauchi Ryohei
(Crop Evolution Laboratory, Kyoto University)
About Crop Evolution Laboratory, Kyoto University
- Search "201551000097281374"
- Search "Crop Evolution Laboratory, Kyoto University"
- Detailed information
,
Abe Akira
About Abe Akira
(Department of Genomics and Breeding, Iwate Biotechnology Research Center)
About Department of Genomics and Breeding, Iwate Biotechnology Research Center
Material:
Breeding Science(Breed Sci)
About Breeding Science
- Search "Y0311B"
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Volume:
73Issue:
4Page:
415-420(J-STAGE)Publication year:
2023
JST Material Number:
Y0311BISSN:
1344-7610Document type:
Article
Article type:
短報Country of issue:
Japan (JPN)Language:
ENGLISH (EN)
Thesaurus term: Thesaurus term/Semi thesaurus term Keywords indexed to the article.
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About software
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Author keywords(7):
About molecular marker
- Search "molecular marker"
- Detailed information
,
About primer design
- Search "primer design"
- Detailed information
,
About target amplicon sequencing
,
About variant call format
,
About next-generation sequencing
- Search "next-generation sequencing"
- Detailed information
,
About genomics
- Search "genomics"
- Detailed information
,
About breeding
- Search "breeding"
- Detailed information
JST classification(2): JST classification
Category name(code) classified by JST.
(FC02010K)
About Plant breeding in general
,Research methods in genetics
(EC01020N)
About Research methods in genetics
Reference(19):
- Baird, N.A., P.D. Etter, T.S. Atwood, M.C. Currey, A.L. Shiver, Z.A. Lewis, E.U. Selker, W.A. Cresko and E.A. Johnson (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3: e3376.
- Bolger, A.M., M. Lohse and B. Usadel (2014) Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics 30: 2114-2120.
- Camacho, C., G. Coulouris, V. Avagyan, N. Ma, J. Papadopoulos, K. Bealer and T.L. Madden (2009) BLAST+: Architecture and applications. BMC Bioinformatics 10: 421.
- Cock, P.J.A., T. Antao, J.T. Chang, B.A. Chapman, C.J. Cox, A. Dalke, I. Friedberg, T. Hamelryck, F. Kauff, B. Wilczynski et al. (2009) Biopython: Freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25: 1422-1423.
- Danecek, P., A. Auton, G. Abecasis, C.A. Albers, E. Banks, M.A. DePristo, R.E. Handsaker, G. Lunter, G.T. Marth, S.T. Sherry et al. (2011) The variant call format and VCFtools. Bioinformatics 27: 2156-2158.
more...
Terms in the title(5): Terms in the title
Keywords automatically extracted from the title.
About 遺伝子タイピング
- Search "遺伝子タイピング"
- Detailed information
,
About ゲノム
- Search "ゲノム"
- Detailed information
,
About SNPマーカー
- Search "SNPマーカー"
- Detailed information
,
About 設計
- Search "設計"
- Detailed information
,
About ソフトウェア
- Search "ソフトウェア"
- Detailed information